Figure 1. Cross test for brill.
Figure 2. Cross test SSB reference points for brill.
Figure 3. Cross test F reference points for brill.
Figure 4. Simulation test for turbot.
Figure 5. Cross test SSB reference points for turbot.
Figure 6. Cross test F reference points for turbot.
Figure 7. Simulation test for ray.
Figure 8. Cross test SSB reference points for ray.
Figure 9. Cross test F reference points for ray.
Figure 10. Simulation test for pollack.
Figure 11. Cross test SSB reference points for pollack.
Figure 12. Cross test F reference points for pollack.
Figure 13. Simulation test for sprat.
Figure 14. Cross test SSB reference points for sprat.
Figure 15. Cross test F reference points for sprat.
Figure 16. Simulation test for lobster.
Figure 17. Cross test SSB reference points for lobster.
Figure 18. Cross test F reference points for lobster.
Figure 19. Simulation test for razor.
Figure 20. Cross test SSB reference points for razor.
Figure 21. Cross test F reference points for razors.
Figure 22. Retrospective test
Figure 23. Single retrospective test
This vignette and many of the methods documented in it were developed under the MyDas project funded by the Irish exchequer and EMFF 2014-2020. The overall aim of MyDas is to develop and test a range of assessment models and methods to establish Maximum Sustainable Yield (MSY) reference points (or proxy MSY reference points) across the spectrum of data-limited stocks.
R version 3.4.1 (2017-06-30)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.2 LTS
Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] doParallel_1.0.10 iterators_1.0.9 foreach_1.4.4
[4] GGally_1.4.0 mydas_0.0.0.9000 FLXSA_2.6.1
[7] FLAssess_2.6.1 FLBRP_2.5.3 ggplotFL_2.6.4.9002
[10] FLCore_2.6.9 lattice_0.20-35 dplyr_0.7.6
[13] plyr_1.8.4 reshape_0.8.7 ggplot2_3.0.0
[16] knitr_1.20
loaded via a namespace (and not attached):
[1] Rcpp_0.12.18 RColorBrewer_1.1-2 pillar_1.1.0
[4] compiler_3.4.1 bindr_0.1.1 tools_3.4.1
[7] digest_0.6.15 evaluate_0.10.1 tibble_1.4.2
[10] gtable_0.2.0 pkgconfig_2.0.1 rlang_0.2.2
[13] Matrix_1.2-10 yaml_2.1.18 bindrcpp_0.2.2
[16] gridExtra_2.3 withr_2.1.2 stringr_1.3.1
[19] stats4_3.4.1 rprojroot_1.3-2 grid_3.4.1
[22] tidyselect_0.2.4 glue_1.2.0 R6_2.2.2
[25] rmarkdown_1.9 reshape2_1.4.3 purrr_0.2.5
[28] magrittr_1.5 codetools_0.2-15 backports_1.1.2
[31] scales_1.0.0 htmltools_0.3.6 MASS_7.3-47
[34] assertthat_0.2.0 colorspace_1.3-2 labeling_0.3
[37] stringi_1.2.3 lazyeval_0.2.1 munsell_0.5.0