Brill

Figure 1. Cross test for brill.

Figure 2. Cross test SSB reference points for brill.

Figure 3. Cross test F reference points for brill.

Turbot

Figure 4. Simulation test for turbot.

Figure 5. Cross test SSB reference points for turbot.

Figure 6. Cross test F reference points for turbot.

Ray

Figure 7. Simulation test for ray.

Figure 8. Cross test SSB reference points for ray.

Figure 9. Cross test F reference points for ray.

Pollack

Figure 10. Simulation test for pollack.

Figure 11. Cross test SSB reference points for pollack.

Figure 12. Cross test F reference points for pollack.

Sprat

Figure 13. Simulation test for sprat.

Figure 14. Cross test SSB reference points for sprat.

Figure 15. Cross test F reference points for sprat.

Lobster

Figure 16. Simulation test for lobster.

Figure 17. Cross test SSB reference points for lobster.

Figure 18. Cross test F reference points for lobster.

Razors

Figure 19. Simulation test for razor.

Figure 20. Cross test SSB reference points for razor.

Figure 21. Cross test F reference points for razors.

Figure 22. Retrospective test

Figure 23. Single retrospective test

Software Versions

Author information

Laurence Kell. laurie@seaplusplus.es

Acknowledgements

This vignette and many of the methods documented in it were developed under the MyDas project funded by the Irish exchequer and EMFF 2014-2020. The overall aim of MyDas is to develop and test a range of assessment models and methods to establish Maximum Sustainable Yield (MSY) reference points (or proxy MSY reference points) across the spectrum of data-limited stocks.

References

Session Info

R version 3.4.1 (2017-06-30)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.2 LTS

Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] doParallel_1.0.10   iterators_1.0.9     foreach_1.4.4      
 [4] GGally_1.4.0        mydas_0.0.0.9000    FLXSA_2.6.1        
 [7] FLAssess_2.6.1      FLBRP_2.5.3         ggplotFL_2.6.4.9002
[10] FLCore_2.6.9        lattice_0.20-35     dplyr_0.7.6        
[13] plyr_1.8.4          reshape_0.8.7       ggplot2_3.0.0      
[16] knitr_1.20         

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.18       RColorBrewer_1.1-2 pillar_1.1.0      
 [4] compiler_3.4.1     bindr_0.1.1        tools_3.4.1       
 [7] digest_0.6.15      evaluate_0.10.1    tibble_1.4.2      
[10] gtable_0.2.0       pkgconfig_2.0.1    rlang_0.2.2       
[13] Matrix_1.2-10      yaml_2.1.18        bindrcpp_0.2.2    
[16] gridExtra_2.3      withr_2.1.2        stringr_1.3.1     
[19] stats4_3.4.1       rprojroot_1.3-2    grid_3.4.1        
[22] tidyselect_0.2.4   glue_1.2.0         R6_2.2.2          
[25] rmarkdown_1.9      reshape2_1.4.3     purrr_0.2.5       
[28] magrittr_1.5       codetools_0.2-15   backports_1.1.2   
[31] scales_1.0.0       htmltools_0.3.6    MASS_7.3-47       
[34] assertthat_0.2.0   colorspace_1.3-2   labeling_0.3      
[37] stringi_1.2.3      lazyeval_0.2.1     munsell_0.5.0