Cross test using Operating Model based on Life History
VPA
L Kell
02 October, 2018
Brill
Figure 1. Cross test for brill.
Figure 2. Cross test SSB reference points for brill.
Figure 3. Cross test F reference points for brill.
Turbot
Figure 4. Simulation test for turbot.
Figure 5. Cross test SSB reference points for turbot.
Figure 6. Cross test F reference points for turbot.
Ray
Figure 7. Simulation test for ray.
Figure 8. Cross test SSB reference points for ray.
Figure 9. Cross test F reference points for ray.
Pollack
Figure 10. Simulation test for pollack.
Figure 11. Cross test SSB reference points for pollack.
Figure 12. Cross test F reference points for pollack.
Sprat
Figure 13. Simulation test for sprat.
Figure 14. Cross test SSB reference points for sprat.
Figure 15. Cross test F reference points for sprat.
Lobster
Figure 16. Simulation test for lobster.
Figure 17. Cross test SSB reference points for lobster.
Figure 18. Cross test F reference points for lobster.
Razors
Figure 19. Simulation test for razor.
Figure 20. Cross test SSB reference points for razor.
Figure 21. Cross test F reference points for razors.
Figure 22. Retrospective test
Figure 23. Single retrospective test
Software Versions
- R version 3.4.1 (2017-06-30)
- FLCore: 2.6.9
- FLife: 3.2.1.9001
- FLBRP: 2.5.3
- FLAssess: 2.6.1
- FLXSA: 2.6.1
- Compiled: Tue Oct 2 07:05:59 2018
Acknowledgements
This vignette and many of the methods documented in it were developed under the MyDas project funded by the Irish exchequer and EMFF 2014-2020. The overall aim of MyDas is to develop and test a range of assessment models and methods to establish Maximum Sustainable Yield (MSY) reference points (or proxy MSY reference points) across the spectrum of data-limited stocks.
References
Session Info
R version 3.4.1 (2017-06-30)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.2 LTS
Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] doParallel_1.0.10 iterators_1.0.9 foreach_1.4.4
[4] GGally_1.4.0 mydas_0.0.0.9000 FLXSA_2.6.1
[7] FLAssess_2.6.1 FLBRP_2.5.3 ggplotFL_2.6.4.9002
[10] FLCore_2.6.9 lattice_0.20-35 dplyr_0.7.6
[13] plyr_1.8.4 reshape_0.8.7 ggplot2_3.0.0
[16] knitr_1.20
loaded via a namespace (and not attached):
[1] Rcpp_0.12.18 RColorBrewer_1.1-2 pillar_1.1.0
[4] compiler_3.4.1 bindr_0.1.1 tools_3.4.1
[7] digest_0.6.15 evaluate_0.10.1 tibble_1.4.2
[10] gtable_0.2.0 pkgconfig_2.0.1 rlang_0.2.2
[13] Matrix_1.2-10 yaml_2.1.18 bindrcpp_0.2.2
[16] gridExtra_2.3 withr_2.1.2 stringr_1.3.1
[19] stats4_3.4.1 rprojroot_1.3-2 grid_3.4.1
[22] tidyselect_0.2.4 glue_1.2.0 R6_2.2.2
[25] rmarkdown_1.9 reshape2_1.4.3 purrr_0.2.5
[28] magrittr_1.5 codetools_0.2-15 backports_1.1.2
[31] scales_1.0.0 htmltools_0.3.6 MASS_7.3-47
[34] assertthat_0.2.0 colorspace_1.3-2 labeling_0.3
[37] stringi_1.2.3 lazyeval_0.2.1 munsell_0.5.0